Node 53
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	1	0	G	1
6	1	0	0	0	A	1
7	1	0	0	0	A	1
8	0	0	0	1	T	1
9	0	0.02	0	0.98	T	0.98
10	0	1	0	0	C	1
11	0	0	0	1	T	1
12	0	1	0	0	C	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0	0	1	T	1
16	1	0	0	0	A	1
17	1	0	0	0	A	1
18	0	0.01	0	0.99	T	0.99
19	0	0	0	1	T	1
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.98	0	0.02	0	A	0.98
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	0.06	0.01	0.93	0	G	0.93
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.02	0	0.98	T	0.98
31	1	0	0	0	A	1
32	0.96	0	0.04	0	A	0.96
33	0	0	1	0	G	1
34	0	0.99	0	0.01	C	0.99
35	0.99	0	0.01	0	A	0.99
36	0.04	0	0.96	0	G	0.96
37	0.04	0	0.96	0	G	0.96
38	0	0	0	1	T	1
39	0	0.01	0	0.99	T	0.99
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.02	0	0.98	T	0.98
43	0	1	0	0	C	1
44	1	0	0	0	A	1
45	0	0.74	0	0.26	C	0.74
46	0.99	0	0.01	0	A	0.99
47	0	0	0.99	0	G	0.99
48	0	0.92	0	0.07	C	0.92
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.7	0.16	0.06	0.08	A	0.7
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0	0.95	0	0.05	C	0.95
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.97	0	0.03	0	A	0.97
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	1	0	0	0	A	1
63	0	0	1	0	G	1
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	1	0	0	C	1
70	0.05	0	0.95	0	G	0.95
71	0	0	0	1	T	1
72	0.09	0	0.89	0.01	G	0.89
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.01	0.88	0.02	0.09	C	0.88
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0.99	0	0.01	C	0.99
82	0.99	0	0.01	0	A	0.99
83	0.99	0	0.01	0	A	0.99
84	0.03	0.34	0.02	0.62	T	0.62
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.97	0	0.03	C	0.97
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	1	0	0	C	1
91	0	0	1	0	G	1
92	1	0	0	0	A	1
93	0	0.96	0	0.04	C	0.96
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.98	0	0.02	C	0.98
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	1	0	0	C	1
100	0	1	0	0	C	1
101	0.04	0	0.96	0	G	0.96
102	0.02	0.52	0.45	0.01	C	0.52
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0.04	0.13	0.71	0.12	G	0.71
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.02	0.01	0.96	0.01	G	0.96
112	0	0	1	0	G	1
113	0	1	0	0	C	1
114	0.01	0.1	0.89	0	G	0.89
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.6	0	0.4	C	0.6
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.01	0.94	0.03	0.02	C	0.94
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0.01	0.53	0	0.46	C	0.53
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.95	0	0.05	C	0.95
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.28	0	0.71	0	G	0.71
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0.02	0.98	0	G	0.98
136	0	0	0.01	0.99	T	0.99
137	0	1	0	0	C	1
138	0.01	0.9	0.03	0.07	C	0.9
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.05	0	0.95	T	0.95
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0	0.99	0	0	C	0.99
145	0	0	1	0	G	1
146	0	0	0	1	T	1
147	0	0	1	0	G	1
148	0	0	1	0	G	1
149	0.99	0	0	0	A	0.99
150	0.74	0.01	0.25	0	A	0.74
151	0.96	0	0.04	0	A	0.96
152	0	1	0	0	C	1
153	0	0.97	0	0.02	C	0.97
154	0	0	1	0	G	1
155	1	0	0	0	A	1
156	0	0.87	0	0.13	C	0.87
157	0.99	0	0.01	0	A	0.99
158	0.01	0.01	0.98	0	G	0.98
159	0	0.87	0	0.12	C	0.87
160	1	0	0	0	A	1
161	0	1	0	0	C	1
162	0.03	0.17	0.77	0.02	G	0.77
163	0	0	0	0	-	0
164	0	0	0	0	-	0
165	0	0	0	0	-	0
166	1	0	0	0	A	1
167	0	1	0	0	C	1
168	0	0.98	0	0.02	C	0.98
169	0	0	1	0	G	1
170	1	0	0	0	A	1
171	0	0.42	0	0.58	T	0.58
172	0	0	1	0	G	1
173	0	1	0	0	C	1
174	0.01	0	0.99	0	G	0.99
175	0	1	0	0	C	1
176	0	0	0	1	T	1
177	0.03	0	0.97	0	G	0.97
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.62	0	0.38	C	0.62
181	0	0	1	0	G	1
182	0	0	0	1	T	1
183	0	0.98	0	0.02	C	0.98
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0	0.95	0	0.04	C	0.95
187	0.26	0.73	0	0	C	0.73
188	1	0	0	0	A	1
189	0	0.97	0	0.03	C	0.97
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	1	0	0	C	1
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.99	0	0.01	C	0.99
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.83	0	0.17	C	0.83
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.08	0	0.92	T	0.92
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.02	0	0.98	0	G	0.98
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.53	0	0.47	C	0.53
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	0.99	0	0.01	C	0.99
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.01	0	0.98	0	G	0.98
220	0	1	0	0	C	1
221	1	0	0	0	A	1
222	0	0	1	0	G	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.04	0.01	0.93	0.02	G	0.93
226	0	0.99	0	0.01	C	0.99
227	1	0	0	0	A	1
228	0.01	0	0.99	0	G	0.99
229	0	1	0	0	C	1
230	1	0	0	0	A	1
231	0.41	0	0.59	0	G	0.59
232	1	0	0	0	A	1
233	1	0	0	0	A	1
234	0.99	0	0.01	0	A	0.99
235	1	0	0	0	A	1
236	0	0	0	1	T	1
237	0	0.1	0	0.9	T	0.9
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.01	0	0.99	0	G	0.99
241	0	0	0	1	T	1
242	0.2	0	0	0.8	T	0.8
243	0	0.19	0	0.81	T	0.81
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.02	0.76	0.19	0.03	C	0.76
247	0.02	0.02	0.95	0	G	0.95
248	0	0.98	0	0.01	C	0.98
249	0.02	0.73	0.08	0.17	C	0.73
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.02	0	0.98	0	G	0.98
254	0.87	0.06	0.06	0.01	A	0.87
255	0.24	0.03	0.71	0.02	G	0.71
256	0.26	0.66	0.06	0.02	C	0.66
257	0.99	0	0.01	0	A	0.99
258	0.03	0	0.96	0.02	G	0.96
259	0	1	0	0	C	1
260	0	0	0	1	T	1
261	0.01	0	0.99	0	G	0.99
262	0	1	0	0	C	1
263	0.99	0	0.01	0	A	0.99
264	0.1	0	0.9	0	G	0.9
265	0.95	0	0.05	0	A	0.95
266	0	0.99	0	0.01	C	0.99
267	0.08	0.24	0.65	0.02	G	0.65
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.03	0.15	0.79	0.02	G	0.79
271	0	0	1	0	G	1
272	0.87	0.12	0	0	A	0.87
273	0.1	0.19	0.69	0.02	G	0.69
274	0	0	0	1	T	1
275	0	0	1	0	G	1
276	0	0.97	0	0.03	C	0.97
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.86	0	0.14	C	0.86
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0	1	0	0	C	1
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.51	0	0.49	C	0.51
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.98	0	0.02	C	0.98
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.67	0	0.33	C	0.67
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0.01	0.74	0.04	0.21	C	0.74
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	0.95	0	0.05	0	A	0.95
301	0	0	0	1	T	1
302	1	0	0	0	A	1
303	0	0.91	0	0.09	C	0.91
304	0	1	0	0	C	1
305	0	0	0	1	T	1
306	0	0	1	0	G	1
307	1	0	0	0	A	1
308	1	0	0	0	A	1
309	0.86	0	0.14	0	A	0.86
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.94	0.02	0.04	C	0.94
313	0.95	0.01	0.02	0.02	A	0.95
314	0	0	0.02	0.98	T	0.98
315	0	0.96	0	0.04	C	0.96
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.01	0.15	0	0.84	T	0.84
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	0.85	0.05	0.02	0.09	A	0.85
325	1	0	0	0	A	1
326	0	1	0	0	C	1
327	0	0.96	0.01	0.02	C	0.96
328	0	0	1	0	G	1
329	0	0	0	1	T	1
330	0.01	0	0.99	0	G	0.99
331	0.01	0.99	0	0.01	C	0.99
332	1	0	0	0	A	1
333	0.01	0	0.99	0	G	0.99
334	0	0	1	0	G	1
335	0	0	0	1	T	1
336	0.05	0.12	0.56	0.27	G	0.56
337	0	1	0	0	C	1
338	1	0	0	0	A	1
339	0	0.97	0	0.03	C	0.97
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	0.96	0	0.04	0	A	0.96
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.14	0.01	0.85	0	G	0.85
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.04	0	0.96	0	G	0.96
349	1	0	0	0	A	1
350	0	0	0	1	T	1
351	0	0	1	0	G	1
352	0.01	0	0.99	0	G	0.99
353	0	0	0	1	T	1
354	0.04	0.01	0.91	0.05	G	0.91
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0.02	0	0.98	T	0.98
358	0	0	0	1	T	1
359	0	0	1	0	G	1
360	0	1	0	0	C	1
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0	0.45	0	0.55	T	0.55
364	1	0	0	0	A	1
365	0.99	0	0	0.01	A	0.99
366	0	1	0	0	C	1
367	0.21	0.33	0.45	0.02	G	0.45
368	0.99	0	0.01	0	A	0.99
369	0	0.97	0	0.03	C	0.97
370	0	0	1	0	G	1
371	1	0	0	0	A	1
372	0.88	0	0.12	0	A	0.88
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0	0.94	0	0.06	C	0.94
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.97	0	0.03	C	0.97
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0	0	1	T	1
385	1	0	0	0	A	1
386	0	0	0	1	T	1
387	0	1	0	0	C	1
388	0	0	0	1	T	1
389	0	0	1	0	G	1
390	0	0.86	0	0.14	C	0.86
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.44	0	0.56	T	0.56
394	0.05	0	0.95	0	G	0.95
395	0	1	0	0	C	1
396	0	0.97	0.03	0	C	0.97
397	0	1	0	0	C	1
398	0	1	0	0	C	1
399	0.03	0	0.97	0	G	0.97
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.57	0.02	0.41	0.01	A	0.57
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	1	0	0	0	A	1
411	0.92	0	0.07	0	A	0.92
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.01	0.01	0.98	0	G	0.98
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0.02	0	0.98	0	G	0.98
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0	0.98	0	0.01	C	0.98
424	1	0	0	0	A	1
425	0.01	0	0.99	0	G	0.99
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.02	0.76	0.19	0.03	C	0.76
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.9	0.01	0.09	C	0.9
433	0.99	0	0.01	0	A	0.99
434	0	0	0	1	T	1
435	0	0.31	0	0.69	T	0.69
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	1	0	0	C	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0.01	0.13	0	0.86	T	0.86
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.15	0	0.85	T	0.85
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	0.98	0	0.02	C	0.98
451	0	1	0	0	C	1
452	0	0	0	1	T	1
453	0.05	0.19	0.61	0.15	G	0.61
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.02	0	0.98	T	0.98
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	0.01	0	0.99	0	G	0.99
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGAGAATTCTCGATAATTTAGAACAGTTTAAGCAGGTTTATCACAGCGGACGCAAATGGCAGCGCTGCGTGGAAGCCATCAATAACATCGACAACATCCGCCCGGGCGTGGCGCACTCCATCGGCGATTCGCTGTCCTATCGCGTGGAAACCGACAGCACG---ACCGATGCGCTGTTCGTCGGCCACCGCCGCTACTTTGAGGTGCACTACTACCTGCAGGGGCAGCAGAAAATTGAGTTTGCCGCCAAAGAGCAGCTGCAGACGGTGGAGTGCTACCGCGACGAAACCGACCGCGAATACCTGAAAGGCATC---GGTGAAACCGTGCAGGTGCACGAAGGGCAGATGGTGATTTGCGATAACGACGAAGCCTACCGCTTTATCTGCGATGCCCCGGTA------AAAAAAGTGGTGCTCAGAGTCACCATTGAAGACGGTTATTTCCTGAATAAGTAA

The most probable DNA sequence without gaps is:
ATGAGAATTCTCGATAATTTAGAACAGTTTAAGCAGGTTTATCACAGCGGACGCAAATGGCAGCGCTGCGTGGAAGCCATCAATAACATCGACAACATCCGCCCGGGCGTGGCGCACTCCATCGGCGATTCGCTGTCCTATCGCGTGGAAACCGACAGCACGACCGATGCGCTGTTCGTCGGCCACCGCCGCTACTTTGAGGTGCACTACTACCTGCAGGGGCAGCAGAAAATTGAGTTTGCCGCCAAAGAGCAGCTGCAGACGGTGGAGTGCTACCGCGACGAAACCGACCGCGAATACCTGAAAGGCATCGGTGAAACCGTGCAGGTGCACGAAGGGCAGATGGTGATTTGCGATAACGACGAAGCCTACCGCTTTATCTGCGATGCCCCGGTAAAAAAAGTGGTGCTCAGAGTCACCATTGAAGACGGTTATTTCCTGAATAAGTAA

The accuracy score for that sequence is 0.960977777777779

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 8.24413545565457e-10.
The natural log of that probability is -20.9163488362303.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
R	1	A	0	9999	
I	1	A	0	9999	
L	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
Q	0.99	H	0.01	99	
F	1	A	0	9999	
K	0.96	R	0.04	24	
Q	0.9801	X	0.009904	98.9600161550888	
V	0.96	I	0.04	24	
Y	1	A	0	9999	
H	1	A	0	9999	
S	0.970299	G	0.009801	99	
G	1	A	0	9999	
R	1	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
Q	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.9405	M	0.0445	21.1348314606742	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
N	0.940896	K	0.049005	19.2	
N	1	A	0	9999	
I	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
I	1	A	0	9999	
R	0.96	H	0.0212	45.2830188679245	
P	1	A	0	9999	
G	1	A	0	9999	
V	1	A	0	9999	
A	1	R	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	0.99	A	0	9999	
L	1	A	0	9999	
S	0.9999	A	0.0101	99	
Y	1	A	0	9999	
R	0.99	A	0	9999	
V	1	A	0	9999	
E	0.9801	D	0.0099	99	
T	0.9504	A	0.0396	24	
D	1	A	0	9999	
S	0.960498	N	0.009801	98	
T	0.99	A	0	9999	
	0	-	0	0
T	1	A	0	9999	
D	1	A	0	9999	
A	1	R	0	9999	
L	1	A	0	9999	
F	1	A	0	9999	
V	1	A	0	9999	
G	0.99	A	0	9999	
H	0.73	N	0.26	2.80769230769231	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
E	1	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	0.99	A	0	9999	
Q	1	A	0	9999	
G	1	A	0	9999	
Q	0.99	X	0.01	99	
Q	1	A	0	9999	
K	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
F	0.8	Y	0.2	4	
A	1	R	0	9999	
A	0.931	P	0.0196	47.5	
K	1	A	0	9999	
E	0.80997	A	0.0588	13.775	
Q	0.646866	K	0.254826	2.53846153846154	
L	1	A	0	9999	
Q	0.99	R	0.01	99	
T	0.931095	A	0.049005	19	
V	0.99	A	0	9999	
E	0.6873	D	0.1827	3.76190476190476	
C	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
G	1	A	0	9999	
I	0.931	F	0.0196	47.5	
	0	-	0	0
G	1	A	0	9999	
E	0.87	D	0.14	6.21428571428571	
T	0.99	A	0	9999	
V	1	A	0	9999	
Q	0.99	K	0.01	99	
V	1	A	0	9999	
H	1	A	0	9999	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
M	1	A	0	9999	
V	0.9999	M	0.0091	109.879120879121	
I	1	A	0	9999	
C	1	A	0	9999	
D	1	A	0	9999	
N	0.99	I	0.01	99	
D	0.4455	H	0.3267	1.36363636363636	Unreliable
E	1	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
I	1	A	0	9999	
C	1	A	0	9999	
D	1	A	0	9999	
A	0.95	T	0.05	19	
P	1	A	0	9999	
V	1.01	A	0	9999	
	0	-	0	0
	0	-	0	0
K	0.99	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	0.99	A	0	9999	
R	0.99	K	0.01	99	
V	1	A	0	9999	
T	1	A	0	9999	
I	0.99	V	0.01	99	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	1	A	0	9999	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MRILDNLEQFKQVYHSGRKWQRCVEAINNIDNIRPGVAHSIGDSLSYRVETDST-TDALFVGHRRYFEVHYYLQGQQKIEFAAKEQLQTVECYRDETDREYLKGI-GETVQVHEGQMVICDNDEAYRFICDAPV--KKVVLRVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MRILDNLEQFKQVYHSGRKWQRCVEAINNIDNIRPGVAHSIGDSLSYRVETDSTTDALFVGHRRYFEVHYYLQGQQKIEFAAKEQLQTVECYRDETDREYLKGIGETVQVHEGQMVICDNDEAYRFICDAPVKKVVLRVTIEDGYFLNKX

The accuracy score for that sequence is 0.981235493333333

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.0357921158236799
The natural log of that probability is -3.33002763821815.

